Publications
1. Gupta S, Pathak E, Chaudhry VN, Chaudhry P, Mishra R, Chandra A, Mukherjee A, Mutsuddi M. A novel mutation in FRMD7 causes X-linked idiopathic congenital nystagmus in a North Indian family. Neurosci Lett. 2015 Jun 15;597:170-5. doi: 10.1016/j.neulet.2015.04.037. Epub 2015 Apr 24. PubMed PMID: 25916882.
2. Singh DN, Gupta A, Singh VS, Mishra R, Kateriya S, Tripathi AK. Identification and characterization of a novel phosphodiesterase from the metagenome of an Indian coalbed. PLoS One. 2015 Feb 6;10(2):e0118075. doi: 10.1371/journal.pone.0118075. eCollection 2015. PubMed PMID: 25658120; PubMed Central PMCID: PMC4320098.
3. "Cross-talk between cognate and non-cognate RpoE sigma factors and Zn2+-binding anti-sigma factors regulates photooxidative stress response in Azospirillum brasilense." Gupta, Namrata, Ankush Gupta, Santosh Kumar, Rajeev Mishra, Chhaya Singh, and Anil Kumar Tripathi. Antioxidants & redox signaling 2014 Jan 1;20(1):42-59
4. Nath A, Subbiah K. Inferring biological basis about psychrophilicity by interpreting the rules generated from the correctly classified input instances by a classifier. Comput Biol Chem. 2014 Oct 17;53PB:198-203. doi: 10.1016/j.compbiolchem.2014.10.002. [Epub ahead of print] PubMed PMID: 25462328.
5. Kumari P, Nath A, Chaube R. Identification of human drug targets using machine-learning algorithms. Comput Biol Med. 2015 Jan;56:175-81. doi:10.1016/j.compbiomed.2014.11.008. Epub 2014 Nov 20. PubMed PMID: 25437231.
6. Singh I, Shah K. Exogenous application of methyl jasmonate lowers the effectof cadmium-induced oxidative injury in rice seedlings. Phytochemistry. 2014 Dec;108:57-66. doi: 10.1016/j.phytochem.2014.09.007. Epub 2014 Oct 6. PubMed PMID: 25301663.
7. Yadav S, Swati D, Chandrasekharan H. Thiamine pyrophosphate riboswitch in some representative plant species: a bioinformatics study. J Comput Biol. 2015 Jan;22(1):1-9. doi: 10.1089/cmb.2014.0169. PubMed PMID: 25243980.
8. Yadav MK, Singh A, Swati D. A knowledge-based approach for identification of drugs against vivapain-2 protein of Plasmodium vivax through pharmacophore-based virtual screening with comparative modelling. Appl Biochem Biotechnol. 2014 Aug;173(8):2174-88. doi: 10.1007/s12010-014-1023-y. Epub 2014 Jun 27. PubMed PMID: 24970047.
9. Jayaswal A, Mishra A, Mishra H, Shah K. Evaluation of novel Saquinavir analogs for resistance mutation compatibility and potential as an HIV-Protease inhibitor drug. Bioinformation. 2014 Apr 23;10(4):227-32. doi: 10.6026/97320630010227. eCollection 2014. PubMed PMID: 24966525; PubMed Central PMCID: PMC4070054.
10. Pathak E, Atri N, Mishra R. Analysis of P-Loop and its Flanking Region Subsequence of Diverse NTPases Reveals Evolutionary Selected Residues. Bioinformation. 2014 Apr 23;10(4):216-20. doi: 10.6026/97320630010216. eCollection 2014. PubMed PMID: 24966523; PubMed Central PMCID: PMC4070052.
11. Singh I, Shah K. Evidences for structural basis of altered ascorbate peroxidase activity in cadmium-stressed rice plants exposed to jasmonate. Biometals. 2014 Apr;27(2):247-63. doi: 10.1007/s10534-014-9705-z. Epub 2014 Jan 18. PubMed PMID: 24442518.
12. Rashmi M, Swati D. Comparative Genomics of Trypanosomatid Pathogens using Codon Usage Bias. Bioinformation. 2013 Nov 11;9(18):912-8. doi: 10.6026/97320630009912. eCollection 2013. PubMed PMID: 24307769; PubMed Central PMCID: PMC3842577.
13. Yadav MK, Pandey SK, Swati D. Drug target prioritization in Plasmodium falciparum through metabolic network analysis, and inhibitor designing using virtual screening and docking approach. J Bioinform Comput Biol. 2013 Aug;11(4):1350003. doi: 10.1142/S0219720013500030. Epub 2013 Feb 25. PubMed PMID:23859267.
14. Singh C, Atri N. Chemo-informatic design of antibiotic geldenamycin analogs to target stress proteins HSP90 of pathogenic protozoan parasites. Bioinformation. 2013 Apr 13;9(7):329-33. doi: 10.6026/97320630009329. Print 2013. PubMed PMID: 23750075; PubMed Central PMCID: PMC3669783.
15. Nath A, Chaube R, Subbiah K. An insight into the molecular basis for convergent evolution in fish antifreeze Proteins. Comput Biol Med. 2013 Aug 1;43(7):817-21. doi: 10.1016/j.compbiomed.2013.04.013. Epub 2013 Apr 30. PubMed PMID: 23746722.
16. Pathak E, Atri N, Mishra R. Role of highly central residues of P-loop and it's flanking region in preserving the archetypal conformation of Walker A motif of diverse P-loop NTPases. Bioinformation. 2013;9(1):23-8. doi: 10.6026/97320630009023. Epub 2013 Jan 9. PubMed PMID: 23390340; PubMed Central PMCID: PMC3563412.
17. Yadav MK, Swati D. Comparative genome analysis of six malarial parasites using codon usage bias based tools. Bioinformation. 2012;8(24):1230-9. doi: 10.6026/97320630081230. Epub 2012 Dec 8. PubMed PMID: 23275725; PubMed Central PMCID: PMC3530877.
18. Singh I, Shah K. In silico study of interaction between rice proteins enhanced disease susceptibility 1 and phytoalexin deficient 4, the regulators of salicylic acid signalling pathway. J Biosci. 2012 Jul;37(3):563-71. PubMed PMID: 22750992.
19. Ojha KK, Swati D. Mapping of origin of replication in Themococcales. Bioinformation. 2010 Nov 1;5(5):213-8. PubMed PMID: 21364800; PubMed Central PMCID: PMC3041001.
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